NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000097

Scaffold Ga0210407_10000097


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000097 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112825
Total Scaffold Genes102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (86.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008315Metagenome / Metatranscriptome335Y
F011314Metagenome / Metatranscriptome292Y
F060173Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000009725F011314AGGAGMAANKTTIGYLVQLAGIGAFAAGAVFSVHHLAIGAAFIGGAAAFYVGQRIRSIA
Ga0210407_100000975F008315GAGGMREMIEPYWWTVAVTSIVQLVVFLRWMYRRIRNDEITRAFVEDMATNHLPHIYELLEKLCDQKGVARSPLPPIRWIDLNRMKH
Ga0210407_100000978F060173GAGGMTGRRYYLTKIGDWQRHASRFSNSHWLALQNSSESSTPIIVLIEADEGVHLALEDDKSFEPLPHPLAQKQISGTAQDALSAHGVSSGATTFEAAEAVSRVHPLLRHRIF
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