NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000105

Scaffold Ga0210407_10000105


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000105 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107470
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (73.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F017187Metagenome / Metatranscriptome242Y
F023670Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000010533F017187GGAGGMQVSKRFRMNLWLVAGAGLLVLTCAPKSRAQSDDVAGQYVCSEAHVAGKAVTCTAPPLSLKTDGKFELQGREGEYLVSGNWVELNGTVLKSRAKRESGHKIVFRFTNSKGACEMIYERRVAEMGKTKLG
Ga0210407_1000010560F023670GGAMATDDTKRAAQEFLAAQFTEAVQIEEERLNSQAAVALAPKVWKRVAETFVAQCEAWNAITKQESLSCKETILGDLRIRCAGKPDIITVHYDSKKLQVTLRNTARPEHEGDSTFFIQGYNGGTEADLSRNNQRANLEVVVLGELRVLAGIGRTAK
Ga0210407_1000010595F000549GAGGVQPQSQGKVARAFRIDGSIVLYRSAARRLFKAERSLVRGEPWWNLIFGVPLFLRTLLRLVIACPHRHKGPPITLRESIPSNLPGRSDYGRGTYITCLDCGQKFAYNYKTRRLVDFWGIHDAVALAGVRRKVGEFFSPLRGLAARIGRLNMRIPKGELARSMHRHGILTKGN
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