NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000123

Scaffold Ga0210407_10000123


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000123 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97949
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (75.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007429Metagenome / Metatranscriptome351Y
F015496Metagenome / Metatranscriptome254Y
F015917Metagenome / Metatranscriptome251Y
F060654Metagenome / Metatranscriptome132N
F061074Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000012372F007429AGGVDAVPYPVALNSIPMKKKQKLAKKSRPVTKPRVQNDRLKGWNEIASFLGQPVAVAQRWARSGMPVMREGRFMYASREELSGYLGREAGLDVPVHIATENMDLSADLKLALAHVRAGKHDKKKKAK
Ga0210407_1000012382F060654AGGAMRHKGVEYPDLKGKIVRRVWFKDDDEFTALFLEFEDNTRARFDLRASVTFERAPEMCSIAPNGDLTDWSDLRIHRLAAHES
Ga0210407_1000012383F061074AGGAMASKRKKPIERHPYCRGKKCRSCTWDSVRVSIDGPHPRYTKGHRGFYNGDIDAVIDDFLIVLKGEARRLLRDCAEQTPALKQFNLKFA
Ga0210407_1000012385F015917AGGAGMEKPKTVRVGNITVTQISPKEREILAQKIRERHARLRNRYREIHKKVVDWVSYSVEQGSVYVCIRFMDKTEFSLQFSPQILTDSIDLADMSTGNFKMIREYYRKADK
Ga0210407_1000012386F015496GGAVYNADLVRQLCGEIANEKDRERAQDLLSLLQAVIKDNQEDIRIRMAFLAKKYGLVSDSKAAD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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