NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000153

Scaffold Ga0210407_10000153


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000153 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87120
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (69.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003829Metagenome / Metatranscriptome466Y
F025376Metagenome / Metatranscriptome202Y
F060225Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000015323F025376GAGVKIVLPALALAAAWTATLFLIANTIGLHTTPGMWTGAIGLPGVVIANWIQQQIVHAFYRPLGYALMFLINWGFYTSVLQGIVSLKRTLTARAN
Ga0210407_1000015329F060225N/AMLYALLAGCGPLRAGEALGIEIDKHISRDFRTLTISQKAKCGEIQPYLKTKNGERQVDLCSKLAAMLREHVGERTSGLLFHSSTSGQLLQSNTLSDSLHPILDYMAHERGGFNIFRRFRLTHVETSGRPDALKQFWSGHAHKHVSERYVKLAQDRDFRLMWAEKIGIGFELPGASVGQRGQLVQFRKAV
Ga0210407_1000015336F003829AGGAGGMSLATQTQEEIRSGSPLKIPDGARILMVCEDNHDTERLRTILREEGFISEWAKSMTAGCEAAKSGQFQVVVSTPLLKDGSWRRLSEVANHYDLGFEIVLWTRNFDLREWAVALEEGAFDVLDAMCEQPMAVEATKGALWAAYLKGAGPNPGAASPRKAA
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