NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000264

Scaffold Ga0210407_10000264


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000264 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63310
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000828Metagenome / Metatranscriptome872Y
F006876Metagenome / Metatranscriptome363Y
F016510Metagenome / Metatranscriptome246Y
F018546Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000026418F018546N/AMAIYAVLLESGAGGGRYYDLLWIAVFGFATLNILSLVARRFEPGRSSMTFGEMLAIATAVICALMLGWELLFMFHVLPIRIEPR
Ga0210407_1000026430F000828GGAGGMSIFDEKYRVVAIDGDRLVVRGVRSGEVLTIVNPEPEIPITAADYPPGRLIALTDPSTLPLN
Ga0210407_1000026431F016510GAGVKAKELTLKQIVSVPCPTCGAEIKEPCELHTGAQRSEPHRDRKLSAADAVEKQSGKR
Ga0210407_1000026456F006876GGAGGMTELETKINNILEEHQHESGLHMIGGRRRLIDRLVQFYEEQSFESGRQTGPQSSSRAS
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