NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000316

Scaffold Ga0210407_10000316


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000316 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58097
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (62.07%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000536Metagenome / Metatranscriptome1044Y
F000552Metagenome / Metatranscriptome1033Y
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F000885Metagenome / Metatranscriptome849Y
F002750Metagenome / Metatranscriptome533Y
F006480Metagenome / Metatranscriptome372Y
F029221Metagenome / Metatranscriptome189Y
F054194Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000031610F006480N/AMRRTFISGLVLLLCGGISARGKNDRLVFRFVYVDHQRDVAILRPMIAPDIGVQLDSGPGELKTGTVLQCHSTVREHDALVEGQIAKITDLLLDCGEHKFVVKTLEFSPSSK
Ga0210407_1000031614F002750N/AMRDFLQRILRRRYVESLEAEVERLRAENRALMNSLLGTAGFPPLDFPETPKPQPLPRLRKRSWQQIQTRRESEAARSIGTETMAGH
Ga0210407_1000031615F054194AGGCGGMPARANRQKISTTIAPENAAYLKSLLKRGKAGTLSEAVDRSIALARRADNRRRLEEATASYYNSLSGVALEEDRTLERALGHEASQVDFDGE
Ga0210407_1000031618F000885AGGAGGMAITSMAANAKTVFIGEIAQVAGIAAVVAGVVLSLHHWPAAVALLGGGVAFYVGKKLRGA
Ga0210407_1000031627F000188GGAGGMGAKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDVRARLNEWVADFALAGQKALAGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVQWSEQVRRRCGAEFLRRGMFPPRKYFEPGS
Ga0210407_1000031632F000536N/AMVELSPQQMKIIERLFEAGFRPIAIPPYESALCMRRGNCAAVLAPELHSGLKLLAPASYIVDGNLSVRLKRGSGEVFAWKKTELPVTSERMQELNAFRQELTEILDSPAIQ
Ga0210407_1000031650F000552AGGAGMPRKLVWTEGANVQRWACSECAWAFNPTWPLVGNSIEEMKTNFGQQLDKEFASHVCAEHPRATTNPG
Ga0210407_1000031651F029221GGGGGMKRVSTFFEIILSATLLFLGLYLLYGGSSNKSVSEPAMLIGGAVCITLSAMTLVSAVRSILWHRRMLRRSTSIGN
Ga0210407_100003167F000696AGGAMPVVGSSAYNTAGQITALVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRVLGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSISDSTAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDSTSPVLIRNAQEAIAYATAALAGWARGSPLAERWDDAAADAIEDLVSAAVRREQQSARRRRPFSARNGYTPF
Ga0210407_100003168F000739AGAAGGMTIRRLEIWLKGLLAAAISGGAGGVLTGFAALGIDPQHFNLQAGIGATLRIGAAAALINAVIGVAAYLQKSPLPSE
Ga0210407_100003169F000512N/AMIRVLRETHETPESVTHRLELAGGRNRFAEANYRAVWGWNRLAWIGGKFTEHDPQSGSLLREVVELRQEPKYPAVNRWHIEKWVPPEVYGSPRAWYAQTMERENGVSIPALGPYPVRGEYEHCFTLESARGEFIQLTPTIAEHVARAIEWPRKFPNSAGKRRLYDREQRQENQYDQWAYDVLDDSVPAFHKQPFVVVP
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