NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000602

Scaffold Ga0210407_10000602


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000602 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39521
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (69.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014595Metagenome / Metatranscriptome261Y
F039281Metagenome / Metatranscriptome164Y
F058400Metagenome / Metatranscriptome135N
F075231Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100006022F039281N/AVIPEIDIWRVANLILTRFGDEAMAEGAKRAEEPAADGDLGGVAVWLRVIDAIRQLAITAPLGSVH
Ga0210407_1000060222F075231AGGAGMSEMITEKDAAAQKARSHPTHDAALPPGQHWFFRNFASVQAALDYLNTPLVQSAGEVSAIARNDGTVGMFYIAPPTAPLQPPQRWLFRSFASPQAALDYLNTPAVQSDGEVSANARNDGTVGMFYIAPA
Ga0210407_100006023F058400N/AMSTPDHDCLDAETILNDLCASKINAVISWIGDGGFHFVLGDPPQAEGWAFSTIGAAAISLRDEACAYYPDSDFARKYGGFVYDQPWPNGR
Ga0210407_1000060234F014595GGAGMRAKKFAKPAARRTALTATLARFVGQRRFDRLCELPLFHPFAARKAIPSPDPVSLAVLAIDRVGPAAVRACASGVEVRVAAPDEATARVLRQALAQTARRRDTDRLIRIVVD
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