NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10001938

Scaffold Ga0210407_10001938


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10001938 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18436
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000547Metagenome / Metatranscriptome1037Y
F010902Metagenome / Metatranscriptome297Y
F017696Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000193820F017696GAGGMTEEAARRTAKLLARGMGITFYVVRGPSGRFLAVQVPSDDCQILATVTPPKSANDRLAA
Ga0210407_1000193821F000547N/AMLTKEIISGFNLLSLAGFVVMGLTLALNRTGWAGKALSIGLMSGGTVLVFFGLYADGGSR
Ga0210407_100019388F010902GAGGMKQRLMRLDRIAGEMNMWLLVIAIGLGMLDLAVLIAKSVPAPPAATSAAGHEHAGVLSLPSRLADSHS
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