NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10005659

Scaffold Ga0210407_10005659


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10005659 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9653
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012080Metagenome / Metatranscriptome284Y
F025102Metagenome / Metatranscriptome203Y
F039848Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100056592F012080GGAGVNRTYQESEKERVWKLLSEAGLIDITPDEFPGRVKEAKDLVMGRLGELLERTTDIRERESAAYSLATLKRLETTLERGEKRHRHG
Ga0210407_100056593F039848AGGTGGVWRDFILEDGRVIPEHKVVGCPEQPVWRRADEVTQDERESWERRLVTMAEAGLDPRDQEQSFWAELNQYLAYTYLRFKRAEGNPSDVE
Ga0210407_100056595F025102GGAGGMNRTAEILLVALALTGMYCAIPKKSDPVGNPAIRAEQMVLVADGSDPMPLCRGKSCK
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