NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10012128

Scaffold Ga0210407_10012128


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10012128 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6408
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F026617Metagenome / Metatranscriptome197Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1001212811F026617N/AGRPPVNITYTGRKTATDNSRKWSPWSIAANCCALIERTNGTAVAALGGGLPGVGDAGATGKIYQLSDTQFSDDGAAIPSYYTTHFFPERAVESSLGLGAHRKLFSYLTMYVEGAGNLALTSFVDSESAATAQQPLGMSSPGLKDLELPINVLGERVAFQVGTNQAGAWFKVQRFAPSVRVDPWAPVRGVN
Ga0210407_100121284F009917AGGAMGSSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEKQGIHLEEQPMVNYVDLRNGGRHR
Ga0210407_100121286F007488N/AMMRIRAYEESELEALRAIHSRQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPAIAQKFGKRLTRLGWIRDDEWTPYCKKLT
Ga0210407_100121287F106044GAGGMPNLTSNATWDFNPGDTVTLNAAFTFDLQDPNDNQTVSGVLTTLQGRTPHVTLTQTDNATISVVVTI
Ga0210407_100121288F000781GAGMLTVAQLAPLKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPMTFGSPATAVAGGGSSGPAPLPSSGSGALPNGLLRGGNGFGIVPGARVVKQAVL
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