NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10147772

Scaffold Ga0210407_10147772


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10147772 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1810
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_101477722F000739GGTGGMTHMHIWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQSEIGATFRIGLAAALINAVIGVAAYLQKSPLPNDS
Ga0210407_101477723F000512N/AMIRIVRETHETPENVARRLEFAGGRNRYGEANYRAVWGWNRLAWIGGKFTEHDPATGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSARMWYAQTIERENGVSIPALGPYPARGEYEHCFTLETPKGEFLQLAATAAEHIAQAIEWSRKFPRSAQKAQLYNREQGKENEYDQWAYDALDDSVPAFHRQPFVTVA
Ga0210407_101477725F006480N/AMRRILIGGMALALCAVAAARSKSDPLVFVFLRVDTTQNLAILRPMIPPDLGVQLHSGPRTLKTGSVLQCDSTSRTHAAIVEGQVGSVRELLLDCGEQKFSVKTLEFSARTK

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