NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000001

Scaffold Ga0210403_10000001


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000001 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)357644
Total Scaffold Genes295 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)249 (84.41%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000678Metagenome / Metatranscriptome940Y
F000783Metagenome / Metatranscriptome893Y
F000923Metagenome / Metatranscriptome833Y
F005419Metagenome / Metatranscriptome401Y
F006031Metagenome / Metatranscriptome383Y
F032792Metagenome / Metatranscriptome179Y
F070346Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_10000001184F000783GAGGMLAATGTWKKKRDDLKDKRNALFETYTKDPQNIHLAREIKDIDDEIADCTQHVEQERRAEQRAASPAAKLMTPSK
Ga0210403_10000001210F000923GAGGMKNKDNGRKWMWWLLGAVVALQFFYVRELLAAFALFALGFAVIALAFGSLYMLHRTWVMAVERLAESKNPVMVSARQSMYAIEDLARRPFRRPGSATAR
Ga0210403_10000001219F032792GAGMTWDAREKAYKAYVFGNDFPGALVETGRFEGDALVFRSEFPVEGATLKLRNVTRVTAPGKLDSEEYMTMPGAPESLLVRVQAKKR
Ga0210403_10000001289F000678AGGAGMDQFEEFGKRIDQEFARLKSINSFEDFGKRVDEELKRVKSFVKEEVAPETEKRTAQFLREVSEKLTEAASWIEARNAARPAQPPKDAKS
Ga0210403_100000013F006031AGGMGETQAMAKSASAGESSASKSLLFMMIAMTCGVCILVGGGFLMTSRLINTLALRNSSDKATVRTPLGDFRVDKAKETGPTLPVYPASTLVLPGTEAARLPSSDSLPQVVTSNYHTNSSREYVANWYAEHLSPEFVRQDSGPKNLPEAFRESHISEDDIAFVGERGDQIRVVVLGSDSMGTKIALLRSAKEAAH
Ga0210403_1000000162F005419AGGAGGVAGSATEAVGQGKDPEVGRPSRGTRKVRAGQAGGVEFQRFFLAKTGGNSGVPEFSKEVPGEPEAMVESLKTGLSYFVVSEWRGVADFSGKKPQLGREAVRSTPKAG
Ga0210403_1000000167F070346GGAGMKRFLAAKSPRSLLSFAEWGALIVLILASASFLFDLINRSIGWIIGLFRIPDELWKECSRWF
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