NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000021

Scaffold Ga0210403_10000021


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000021 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)187907
Total Scaffold Genes164 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)135 (82.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F000381Metagenome / Metatranscriptome1210Y
F002830Metagenome / Metatranscriptome527Y
F004291Metagenome / Metatranscriptome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000002168F002830AGAAGGMRNTKFTAGLLALSLLLAGSAMAGTTNKGTLQFDETVTVAGKQLPAGKYHVEWTGDGPTVELSISDGRETVAKVPAQIVPVKKAEPTSGYSTSADPAGNKTLTGVFFSGRKYDLAIGEVAAATSTPSEKPAASN
Ga0210403_1000002184F000092GAGVKQHLGRQSGVQTVEVSLLDGKVDVTPKEDGQIDPAQLLKATYDSGVTAAEMDMIARGKIVKDPSGGLALQVAPNQSFALTPNELSKGLESLTDTPTIVTVRGQLYKKPAGKKKAEPSAPLKLLILELQKKE
Ga0210403_1000002185F004291AGGAGGMITKKLALVALLISIVSPVAQAQIKHIEMRVEGMT
Ga0210403_1000002190F000381AGGAGGMCPACIAGAAVMAAGAGSTGGIVAVCIAKFRKFFRANGLGLFQKIKEK
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Institute for Fundamental Biomedical Research
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