NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000028

Scaffold Ga0210403_10000028


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000028 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)162978
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)124 (82.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F000239Metagenome / Metatranscriptome1488Y
F001983Metagenome / Metatranscriptome608Y
F002309Metagenome / Metatranscriptome572Y
F002695Metagenome / Metatranscriptome536Y
F076318Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_10000028100F000239GGAGGMDESKRRAVRFLEKEIKTYTALSLFLSKKGIKEPVRVGARKIVISPMFYKDRVKEAKKLVYELRKPS
Ga0210403_1000002812F000173AGGAGGMKTFEVQFRYRDRTERTVESTVKVEASSLPGAVGKAAREFVKGLDRKQRFDMNKNGLEITAKPTGTTTETQASAEAAAS
Ga0210403_1000002813F001983AGGAMTRKNTWVILAMAGAASFSLIACKDTQTLQENEQLKAKVAELQKESGQVGNDLETMTAARDALANENERLKAEIKTLKTKNSGKKAAHRKRRRS
Ga0210403_1000002821F002695AGGAGMVLRTHWTGGVALANSTVANMISLFILVFAVSALVRFGVSQWRAIWISTANQPLSESLRLTAGIDAASIGAGDFGSLLDLCNELSPELRKTSPWLKEVSLYYRAVAAFERAFRTKFPSFSQWANGEMQICSRYVAVTLDQSIAMNLDRQFAARAS
Ga0210403_1000002833F076318GGAGGMIEVGAHTVLEFVKMQFQGKWSRFSLVQQIGYDVNTGGLLMVVTEDENAAKTTYWFKLAAGHEVWVLEDVVHIPAMCIKSAPGDQLRCNA
Ga0210403_1000002846F002309GGGGGMEHFKTEKWIDFVNEVVRADEKKLMEKHLKEGCKRCMETVSLWQRVRESGAAEGKYQPPEGAVRLAKAAFAGAGLAGQRKGADSRIKVLFDSFLQPVFEGARSAGVSTRQMLYRADPYQIDVQVEVKPGSNRILITGQLLDLSNPEIIARDTRILLSNMRGHVVHTVANQFGEFSGEVDNSGDLQMTFARSGGQPIVISLREALGRLPGGRA
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