Basic Information | |
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Taxon OID | 3300020580 Open in IMG/M |
Scaffold ID | Ga0210403_10000037 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 145489 |
Total Scaffold Genes | 129 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 98 (75.97%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000262 | Metagenome / Metatranscriptome | 1428 | Y |
F000532 | Metagenome / Metatranscriptome | 1046 | Y |
F001645 | Metagenome / Metatranscriptome | 658 | Y |
F003039 | Metagenome / Metatranscriptome | 511 | Y |
F003144 | Metagenome / Metatranscriptome | 505 | Y |
F080446 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0210403_10000037100 | F003144 | AGGAG | MTWLRRALHLPAPESNIGLVLVLCVVTMSFMSVALVWQAQIIANQREAIQWLEQLKFGS |
Ga0210403_1000003728 | F080446 | GGAG | MISDEFVQKEILRLAGNGHKSACISTRRISAFYNVPERRIRKQLTLLAEQKKIRLTGWKGSALCPYSDWANSEDFVNSQADGGHFHVDLLD |
Ga0210403_1000003741 | F000532 | AGG | VALIKQRLDVDAVITPGKTGQFEVIADGERIAERGGNWFTRSFGAGYPDLDSVLKLLEKHRRPQG |
Ga0210403_1000003744 | F000262 | AGGA | MTPEKRIQVPRQIRFGPLNQILRFGGLAIFALLCVACNGTNYGVLQPNPEDLCKCLPLEPDVLDFRHTAKHVSIPVIAAQEIGVDTILSWTQDDIVLPEAPRTGRELQVFHVATAFLQEASVNGADCDVHFEISMTADKNASRVIVETPVDSQFCSARQNAQTQLSKHGFKLDSQTGGELPQALPVEVLGMAFQDFDHARGSAQVATNWELHPAIVTIP |
Ga0210403_1000003786 | F001645 | AGGAG | VAILKAPSKQPKTTTLQVRLEEEVRHKLDRYAEFIDANASYVVSEALKLLFRKDEEFKRWLGQHANNHKQEQIQGDALTKTA |
Ga0210403_1000003792 | F003039 | GAGG | MTMKAQELKYVTRRRAAVLLGISEMELSRISSESGFGHRETAGGQEETYFTYEELRQICLLAVQHVH |
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