NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000062

Scaffold Ga0210403_10000062


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000062 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119550
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (86.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000552Metagenome / Metatranscriptome1033Y
F017191Metagenome / Metatranscriptome242Y
F025597Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000006255F025597AGGAGMALLDSIVSANFRSENAGRVVVFPGDRRHRGYLVKSPAEELKIKSFLKMFYGAHFSILFLGYLLGFEWSRQIYRALGRPEAHMFRAMCISVGGFLLVAGVPYFLLWRSYKKAFVSFVSPEDEVLVSGGRAPRPRIFVFIAAAGVILLGLGLLLVFAVSHKP
Ga0210403_1000006257F000552GAGGMQPTRRKLLWIEEEHFWGWSCSECAWLFRPLGPLVGESIDDMKVHYEKQRDNEFTSHVCAEHPRATKNLH
Ga0210403_1000006261F017191AGGAGGMKPHSVLRIGLVSLMLVGAFIAGQHYSRTAAAQSTQKWEYQIVGCGVGCSGQIAQINKLGDEGWEVVTLNASNRILLKRAK
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