NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000146

Scaffold Ga0210403_10000146


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000146 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79188
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (88.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000529Metagenome / Metatranscriptome1047Y
F003283Metagenome / Metatranscriptome496Y
F040214Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000014614F000529GAGGMFNAMLFLISIVALSQFAIYYWRAVLAGVAAQPVSDRVLTAAHVENGRLTSAHFETLAGLHDLTPDLFPNRGGLGLVRFYFRAVRALNSIVGSRMPAVAAWSERERVICARYAAVQVGRRLQANLELAASLRSC
Ga0210403_1000014627F040214GAGGMDWSGGESQEQQAQPGALPPFPRIWIGYVLGVATLVAEMVAITLHPELAKEPLLIPPLYLFLANFISLVYWLVCVYEYHVVLAQATAGGYPIKPLRAAWFHLIPIYGLYWVYKWPRELARFVNARLEVPLLRPDRTGLAVFFAFVVFLVLDRGLGMILLFWSASHLSRCLRLALESRTAQPPGSPPGQLPFS
Ga0210403_1000014636F003283GGAGGMSSGPKGTEQDSIAQCSVCGRIEALFELPGRPEKACLECSADLATAILLSTEIDAATLAGRSTNALVSEFSEISSRMLERSQSAELGNG
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Institute for Fundamental Biomedical Research
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