NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000183

Scaffold Ga0210403_10000183


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000183 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70123
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (77.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F048437Metagenome / Metatranscriptome148N
F087672Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000018338F000207GGCGGMKMILASILTTILIVTMTLGAMFILVQATEYVTSLESPLDRATAMGAELILGVVLLLGTVWLATHLAVRIFSTKEPPPEGGPVV
Ga0210403_1000018341F048437GGAGMPIRAYLPGYSWFRIFRNAAIRIGVYTSVCLALVFTAWLFLANRVPLIERLAVERNLAAAVLLCLCALIPFLRFLSLPGHQLASGLVAWLLFSCYYRLLCVFFRNLSDWHSTFQVFMIGAVVYMIIATLSWITVTIWRTRAAHASHPNHHAS
Ga0210403_100001838F087672AGGAMVKFRYEWFLFDYKKGYPDRISKPFKTKTAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS
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