NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10002545

Scaffold Ga0210403_10002545


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10002545 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16405
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002014Metagenome / Metatranscriptome604Y
F004564Metagenome / Metatranscriptome433Y
F010121Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000254510F004564N/AMESFKPAQPKASFSGATGLIVAVGLVVILLIALPAYRWFFLISLAIGLVVAGILFLWHKLRPIQEKDIENKRPLGLG
Ga0210403_100025452F002014N/AMRKLRIALALGFVFTTAACSPRDFLTRRLASDLIATADTFKSTQQFFLRTGVISNKDYVSPEYLVLQRHGWITGASSPCQPDVAPPPCWEVTLTPMGVETFHDLIPTGAADAKFFGVPVARRQLTGITGISRNGNAADADFLWKWVPLNEVGAALYAGDVQYKATVGFRLYDDGWRVIEGSPPKSNPGLDDALKDSEPAP
Ga0210403_100025455F010121AGGALWQVSEQKKKSGWLWPLGVVATGLGAAGVVIFRGCWHGKMSWPVRFQDHSYQVCLGCGIKRLFDEQAFRAYGPYSYDLNRLIAQDLARTQKTHPETEPAIHRTAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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