NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10068987

Scaffold Ga0210403_10068987


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10068987 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2839
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013999Metagenome / Metatranscriptome266Y
F025001Metagenome / Metatranscriptome203Y
F094175Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_100689871F025001GAGGMIQPFTLYLVAALIGAFAVAMLALAALLPQAAAGRLRSESKTESELKLSSLAARVPISEIRDGLIVRRDGSFCAGWECSGVATQFADAERLEAVSAAFDAFIKGIRHPEIELQFRYLIDYETPRVLEERKALRNCANSPAGWLEENRLSFWRSAIDAGQMRSIRLVAFVSWKPKQTWETRSAA
Ga0210403_100689872F094175AGGAVIGWAIVMRLVGDHIHRVFLGFVPVSTVMTYGSAVLLVGLIRWAKHGKPRGYLVAWVQHHFRTKAHCAHCGSLEMPYLIEGEQ
Ga0210403_100689873F013999AGGAGGMSRIISRKHGIDLRRFARPIGSALATLLLSSPAFAQFGGDRVTSFLSNALSYAQSLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
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