NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10120452

Scaffold Ga0210403_10120452


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10120452 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2135
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029255Metagenome / Metatranscriptome189Y
F035901Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_101204521F035901N/AYPKETQLAQKRFQNFLRRANTKGRLTLAKTPFVAVRAYQLNADEVPGLNWRIALGRVPMKGYYGDDLMHNTGSLPVEFLLIFDQRTGRLASSDGILVIGSPVRGSIGQFGGVQAIYADGGWW
Ga0210403_101204522F029255AGGMNHKSSIFFAVAALLSACGTMNSAKVDNRDFAIDTYYPASNEIRLAEQRARQYWEKNSARVGAEPRYLAVEASALLAPELSAEFSTKLDRSETSGAYFTQGISSSSKQGISGVLIFDTQTDRSVGPQGYIIVDIPSRGRVVRVADYMARYIGAGG

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