NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10000033

Scaffold Ga0210399_10000033


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10000033 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95239
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (88.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012272Metagenome / Metatranscriptome282Y
F013843Metagenome / Metatranscriptome268Y
F064182Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_1000003327F013843AGGMSLHSPHPQSKSHHAAAVAAAGIVRNQRRSKRMGLSAAVGLSGEDRLKCSFTMPTRATNLNKHGAAVQLTRDLPVGSVVQLRNKMGSQVSARIVALLKASPGVSTYGIEFVEQDGGATNFWGISFPSNA
Ga0210399_1000003338F064182AGGAGMEILRDRNGKPQGMFREIAGGQQRRYDRAGNAIASYRPRTDYTYDNNGCRIGSGNRLPGIVGTKPR
Ga0210399_1000003388F012272N/AMKKDSRLTFRVNSDLKRDVEAIATREGQSVARICEAFIVAGSDAYKKQGTKFVRRMLGRLGTKTTE
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