Basic Information | |
---|---|
Taxon OID | 3300020581 Open in IMG/M |
Scaffold ID | Ga0210399_10012874 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6569 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000807 | Metagenome / Metatranscriptome | 883 | Y |
F001463 | Metagenome / Metatranscriptome | 690 | Y |
F052739 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210399_100128743 | F052739 | AGG | MAETTTTKFAELRRSRRAKITKPLRVRPSEPRDEHFEDLPVSVNASKEGIYFHTRRSNYYKGMRVFVTFPFTSVHDPMNCEYVAEVVRVESLPNGKFGVALHLKMTMNYSAGAPPGKITR |
Ga0210399_100128745 | F001463 | AGGA | MMNLHKLPPVIEDLRDHSQEQLTELRLLLNAGLEGRPDVRRPGFFELDGVDNVYYIFRYPTGHKVLLLAAWQREVDPVAEMVAYARPAA |
Ga0210399_100128749 | F000807 | GGAGG | MPCNSCGSVNQKKFSAEMGVHFPELKNIDKPVVWVLSEVVVCLDCGTAEFSVPKDELRQLQQSDSAATG |
⦗Top⦘ |