NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10028633

Scaffold Ga0210399_10028633


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10028633 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4446
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002159Metagenome / Metatranscriptome589Y
F020972Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_100286332F020972AGGAGVPELDLNLAPTAADMPEMAIVLIRAIIAAADKDRDEMTVLLIHGEPAAVIAPYGHERRPGAAAGIRFDQTAPPEARLVLTDVWGGSIRMSTGEFRQLAREGVSGRFETMAQIAESWS
Ga0210399_100286337F002159AGCAGGMRYSDAKMTGSVSQAASGAATAGSRPALGGAVSDIILAVNERQIAPGETACFPFAARTAYGIPSIHEFNVISDNPNFNPEWVRLGRSAGDSYGPHYILEISPDDIGRSQYGTYPLRLSWRADGTYRHAGGRCTLIIRPCVRAVTEPAVTIWPAGQVCVLLENRGSTGIDVSVSIRHRGSDWSKEWEFELPEKDDTFSFSGRFDPPAGKRSGDFELAVSAAGVPLVRRTVRARRSLIPRRLIRDIQVCA
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