NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210399_10226215

Scaffold Ga0210399_10226215


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10226215 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1558
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005865Metagenome388Y
F009563Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_102262151F005865GAGGMPAPEPGPEWVLSGANPRLDPATESELSKAARSAWPKALAHVRQVQSRNPFNDDGILVAEVWESVLQSVSRTLDRMNGNRGQIGDLEAYLLGSFYHRLRRALKKEERREETIYLVSSAQELELLDKTSRVVQDDIEGKVHAQEILDRMDEWSRKVWIAREYGYTWKQIGEVLGTPGDSVMLRFRRRMKILRERLFGGR
Ga0210399_102262152F009563AGGMQRRRGLIWVAAAAVLLFAVGGWLWIRARHSMEATDTAVLDLRERSVTRGQNPSESAPLQISRTTKHLVLELPIGSKEGPYDFGLLAETGTQIVSATGTAHLRDRVTTLRVEVELSSVRPGAYSLGVRQPNLEWTKYPIRVF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.