NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10240005

Scaffold Ga0210399_10240005


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10240005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1510
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000673Metagenome / Metatranscriptome944Y
F021825Metagenome / Metatranscriptome217Y
F105673Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_102400052F000673AGGLEKKSFSRNFRYPSAELRDQVRAAVKERGFRSEQAFLIAACEHEIRQGANTEATEQFEARVAATLANLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRETLKGMVADE
Ga0210399_102400053F105673GAGGMECSRIVVEAPGYWNIKGWGHFVAFFWLNYFYFLRFAWYHLEQKVVPLWNRS
Ga0210399_102400054F021825AGAAGGMAKNYENCLDKLAAAPPETKSALIRSLLPRIEAALNSGQRLKAIWKALRKEGLQITYRGFHITVSRARKRRTTAAGSRGKQDSSPAPQGLQETKVETVEERDPFANLKLLEQNRPGFHWR
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