NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10423804

Scaffold Ga0210399_10423804


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10423804 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053003Metagenome141Y
F071916Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_104238041F071916N/AAKVLSVAIMVLLVIGALGPANWTPRTALGWQIDHFLGYFAITLLVCFAWPRPFLVGGVLVAAAFLLEGLQAFTPDRTANLVAALCGAGGVLAAALLAELFGRAWRRHRKSARESKSSV
Ga0210399_104238042F053003GGAMALDAGTALERPVLSAHSDGDYYFTLRAVTAGASVKHRIRAGAKACCVPIVVLLVIAALGPEKWAPRTHLGWQFDHFIGYFGITLFVCVAWPRPFLIGGVFAAIAALLEGLQAFTPDRSAYLPAILYGAAGALAAALIAELAIRAWRLGARRTVANFERFLAHRARHETTLPSNAIPFGGAPLTTDHV
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