NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000010

Scaffold Ga0210395_10000010


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000010 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)302746
Total Scaffold Genes261 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)212 (81.23%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F000552Metagenome / Metatranscriptome1033Y
F001273Metagenome / Metatranscriptome733Y
F007725Metagenome / Metatranscriptome346Y
F011263Metagenome / Metatranscriptome293Y
F023656Metagenome / Metatranscriptome209Y
F026416Metagenome / Metatranscriptome198Y
F027252Metagenome / Metatranscriptome195Y
F080260Metagenome / Metatranscriptome115Y
F095819Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_10000010102F095819GGAGVRLKIYLRELARRARLLAGVYGIVCAGLLVVAAAAPDQPAGDTVGLIEGQDIRVTGPMSVEVVAGQTKTILRSGSDVQVKSGQARISLVEGGQISVCGPAHFSVLKSGGALTVALESGAIHARVDREPALTVYTAEIQAQTMAIGDDPRDVLMGFPSPGMMCIHTYRGALRVEQQLSGRSVIVPQGVDVMLANGQIDEMRNGAGQCKCELQIAKIPAAPAGGSDAAASSSEEAADEKPEAREEPIYTVIMPPLEFDAKAKVQPEPDMRLMTIVRRVRVRPALVFQGRVEEEATATAVATKAPPKPPAASAAAKKTTPAEGSVVDRMRSFFRKLWSRGG
Ga0210395_10000010113F080260AGGAVEPPKFTPAELSGLIGEAVAWMQQQRDHYRPLSDPLPEVVKDKLRPFFPSDVLERLRIKDGSKTGGVIPYPPFYERVRAGGARVVPDAAHMTAIPFIDVALFNRQPTLRTIFHTLVHVTQFSVIGLERVMAGYFKALNESGLWMVVPYEEQAYNLDARYTKDPAQAFSVEAEVRAWLRNGKF
Ga0210395_10000010137F027252GGAGGLTHFFQKTARPLFAVLLAVFMAMGAVLAAPAQEKKASQTDGVDNTKMGAYRAIAQHAYLEFQKGDSAAAAQLARSLERVWDKGEDYGGDTALKKTHPDLFEQIDKAMDDFITPLMEYKTKAPDQARIKAAFNAYMEKLKLAD
Ga0210395_10000010144F007725GGAGMRFRTILSLATFFAACFTLAVFAQPLPANAGGYGTRLAPENQSVSGQIATVGDAAFAINITKNNQKAETVEFLVDDKTKVEGKLTIGAQAMVEYRSDSGKNIAVHVVVTPASGINPY
Ga0210395_10000010158F001273AGGAGGMRIDLYTKTILTIIALLLAIIVMKPLFQPQPALAEGKYAGVQFSYSGGNHAFFDARTGDVWEYGEDGHFRQHHKVHEFGKDHDH
Ga0210395_10000010159F000549GAGGMRPQLQKKLARANRIDGSIVLYRSAARSQLKALRPLSCGEPWWNMVFRVPLFLRTLLRLVFVCPHWHKGPPVTLRESIPTDLSGCRPVCGRGSYITCLDCGQKFAYNHRTGHLEDFWGVHDAEALAGVRRRLEGFFSPLRGLAARGWRLNLRTPMSQRVRSVHRLGVLTKGQ
Ga0210395_10000010187F011263N/AMLTPQRALRLMIEVIFLLLGVLVIWLALTGRVLVERHKPSWLILSGALILWGLRALYGPNRWWARWENWTRGLSLTLLGLVMLAIYRVPFLWVGPLLATAGVLMGLRGVIGAALVFRPR
Ga0210395_1000001019F023656AGAAGGMSHKTINKESKTFVEEFRERLNREDLERRWKLEALDHLFTESEDQPEKFHRLWIKPLMSAGLSLESAFALVVEARFRPN
Ga0210395_10000010246F000552GAGMEPMRPKLVWVEGQNFQGWACSECAWVFNPSWPLAGKSIDEMKTDFGQQRDKEFASHVCAEHPRTTNNPH
Ga0210395_1000001062F026416GGAGMKTGRWLTGIGSVILFLTGIGHGFRIVDVQKMIVESGMKAPLDVILKGCWLVFSGEMVALAVIAMVASGMAGGGRIVLLCAATMIANAMLLLYFMGPFFGVYVSVVVALFFLPGGWLQIKKST
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