NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000011

Scaffold Ga0210395_10000011


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000011 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)300709
Total Scaffold Genes268 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)180 (67.16%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000595Metagenome / Metatranscriptome999Y
F000822Metagenome / Metatranscriptome876Y
F000978Metagenome / Metatranscriptome815Y
F001431Metagenome / Metatranscriptome696Y
F004485Metagenome / Metatranscriptome436Y
F004490Metagenome / Metatranscriptome436Y
F011872Metagenome / Metatranscriptome286Y
F061220Metagenome / Metatranscriptome132Y
F080284Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_10000011109F001431N/AMPFIIKLIMRGTDLKTTERRETRMSTIQDVSAEQLAKLFHHYREALAHNGGDHGIKEESSAWDRAPQTERRLMVAAARLALIELATTPVESRPSRKYYAKPGEADWGC
Ga0210395_10000011119F061220GGAGGMRLATLFCLFFSLAGISAAQDTNFSAGPQYLITSSSPMFLHSIATPSLSLEPSLPELQSLPQIGPAVEDQPFVANPELPRGADLFPIYYGSPAPSVVEITSTELPQELPASIADAGVTGMTTAQSLRERGYGVPLGDTAAFWKAHKHPAAHVYTNADVQRLHAS
Ga0210395_10000011121F011872AGGAMAAESNTRTGKDSLKVEKLSLLVLTLCIVVLVYVLVARPF
Ga0210395_10000011187F004485AGGAGMNYREHYTPGPASTVELCQLWSGHLDALERHLSANTWALAAVAAVLTIYPIGRIAIPAILHGIVTHGIVPDVVRNVLNVI
Ga0210395_10000011222F000822AGCAGGMNSTGFRTGFQIKALQTKVLHSSIFRTMIFQTMIRCAVGVLALASVAFGQSSHVYRGEVSDSQCALNVHSLTRSHQEMLKSKEMGGTSSTCSMYCIEHLGGYLVLSAGKDVFRLDRADLVHGFEGQRVVVTGILDPKLKQIHVLKIDLEEKP
Ga0210395_1000001150F000595AGGAGMDGITGLAAVIMVLGMPTAVLGMYTFYRVRKLRTEERLAAMQRGVSVPMEPDLTEAAHSRRAGILLIAGAVGYMLAFTIISRVEPDALIASAFGAIPFTLGVGYLLDSTLIRRETRA
Ga0210395_1000001175F000978GGTGGMFAQTVGVKPRQKSGAQRICFCPQCAVSLAMGMPPEGALNLAAWDMIRDIVSAEPALNQAAWESLRRGGVALLESGEESESGGDSRQRYRRAG
Ga0210395_1000001187F004490AGGAMECGTKDELEQHLSDIRSLAVTKGLTSEQTTAAARAERFAIALVREHDSTGHKGKRCPYATRVSPSLEG
Ga0210395_1000001199F080284GGAGGMEFEIASSNSDSDLTSKVSYGRLANRVAPDVQVVFKAAHDEMRRLIQQRVEITQRIGTIKQAIVGLCNLFGDDGLSDDLRELVNGKAAPRRPGITQACRKVLTDARCPLTARNVCEQIQQTMPDLPCAKNLLAEVTTVLSRLAQYGEARIVPCNGSRAWVWVSDVKDGSVEDESFHPVVPALDSQA
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