NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000018

Scaffold Ga0210395_10000018


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000018 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)250088
Total Scaffold Genes211 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)180 (85.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010511Metagenome / Metatranscriptome303Y
F011960Metagenome / Metatranscriptome285Y
F026083Metagenome / Metatranscriptome199Y
F043500Metagenome / Metatranscriptome156Y
F084518Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_10000018121F011960AGGAMVLLAKIALGFGATVVMAGAYTFHEGLLRVDVDETHGKGSHVHVWVPAAIVPMAMHFIPRDRMRDAGERARNFMPLVHAVAKELQKYPEAELVEVHDGPQYVRIRTHNGNLLVDADEPGQAVHVSCPLATIDDVSRELATFAPGS
Ga0210395_10000018127F010511GGAGMGLERVAQSFLRYVAYSMLCLVLNAPAKAQTVDVSGSYQCTQAVVQGKVIRCTAAPLILKNDGHFELRGWEGSYLVDGSWVELSDALTKARAKIEPGHKIVLRYFGKHGWAEMTYERRVAEMGKTSLS
Ga0210395_10000018198F084518AGTAGMNTYSVKIRYEDRNKGTEGTTVKIDATAIAGAIAKAAREFVKSLDRKQRFDANKGLQLEVVRVTTDKADSPESISSAPSSTTYD
Ga0210395_1000001822F043500GAGGMAMKNFKALLPKTVWVGTLGVAAMLLGWTPSCKAQEVSPAIFTDTGVEDAYPVAKPLAKKPARVQVAAHAVQSVASNDSNERKQNAHRVARKVKVTATPGL
Ga0210395_1000001873F026083GAGMAFESVYHPNLQLGLSEKQEVWNTPGAFFVWMFVDGELVGESYGIPLASPSDFLNDLLVLPANERENAVCCYSNTILPRFQKRGYGAILKAHWLGLAAGKGFDVVYGHARPGGSQALNAKFGAVFLENLPDWFGSGEDYRKYRLALGTNADS
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