NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000095

Scaffold Ga0210395_10000095


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000095 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70962
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (74.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013434Metagenome / Metatranscriptome271Y
F015365Metagenome / Metatranscriptome255Y
F050582Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1000009535F050582GGAGGMATAPMGGLEGLRLPDLLVLIKQTAEWARNRRVLDPRAAIVPDEILEAKVLYTRARAWLLGESPRRAEPKWRRLGEVEAAFFALYDALRSQITSPLLMNAKNIDGWQP
Ga0210395_1000009548F013434N/AMRNTVFRQGLETAAVAILGLTGHLGGFLGGVSGPS
Ga0210395_1000009563F015365N/AMRARSLILVAGLLPAFAAISLGQETVAPVPGPLPQTEAEKTALLDLVLANQKKNDQALNLYERVERVEMRKNAVDKQTGEIKVSRVVPAGTGVDHIPIGPDGKPTDPDAYHTELVKLERALSWAADDGHAQHDAYERIAKKQKERDDLIDATRVAFVYSLVSSETRDGRVLYKYKMEPNPSYKPTSRATSIFAKVRGFVWIDREAGQIARVEGEVTGDITVGLFLAKVYKGSHFMQERYEMFPGLWMPSFSQYDFDGRRLFSSISIHERTFYGQYHRIGPPKEALAMIRAELGKPDGTIANP
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Institute for Fundamental Biomedical Research
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