NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000192

Scaffold Ga0210395_10000192


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000192 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47568
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F001983Metagenome / Metatranscriptome608Y
F007725Metagenome / Metatranscriptome346Y
F027252Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1000019216F027252GGAGGLTHSFRRTTAPIFAILVALSMGMAGFSAQEKKVPQTAGVDNTKMGAYRAIAQIAYVQFQKGDAAAAAQLAHSLERVWDKGEDYGGDTALKKTHPDLFEQIDKAMDDFVLPLMDYKTKPPDPARIKAAYNAYLEKLKLAD
Ga0210395_1000019244F000173GGAGGMKTFEVQFRFRDRSEETVELTVTVEASSLPGAVAKAARGFVKGLDRKQRFDMNKNGLEITAKSAGTTTPEQPAASTEAAAG
Ga0210395_1000019245F001983AGGAMTRKNAWAGLAVAVLLGLPLAACKDTKTLQENEQLKAQVAELQKENGQLGNDIETMTAARDTLAKENETLKAELKARKTKRSGRKHRRNQ
Ga0210395_100001926F007725GGAGGMRFRAILTLATLFMTCFTIAVFAEPLHLMGGPARTDRLPENQSVSGQIASVGDAAFAISIKKDKQGSQTVEFLVDDKTKVEGKLTIGAEALVEYRSDSGRNIAVHVVVTPASGIGPY
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