Scaffold Ga0210395_10000729

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210395_10000729

Scaffold Ga0210395_10000729

Overview

Basic Information
Taxon OID	3300020582 Open in IMG/M
Scaffold ID	Ga0210395_10000729 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25191
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001994	Metagenome / Metatranscriptome	607	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000072910	F001994	AGGAGG	MRAILISVAIVLMCGPMLAQQRKQATTVPRTFVPNEPQPCIEFNRMAARLDAVYKTDEISKTEYDEGMKKYRDSTQEEGVDYFIGGKDKYQRISLQWDKLAEFIRWYAVEGGRGQMGVANTHCNTELGERVGVGEKEGAYERIYALRQLQDAMTVSQAEGLLADVALEGQNVMIKAILESESARGKVVDRYNKLVENVNTYNKAVNDLVVTVNTAMSEPKGSTLAPTLSFNFVRLQPIKCTGSASAFTNSTAYMANLHTAANATATMDCE

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