NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10003511

Scaffold Ga0210395_10003511


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10003511 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12010
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014056Metagenome / Metatranscriptome266Y
F033525Metagenome / Metatranscriptome177Y
F069184Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_100035112F033525GGAGGMKPLSIGLCTVLALLLISFQRPIQAQTTRAQTTADAEVTLTGTVQSVLVKGAPGMIVGSHLLLATPNGTVDASLGRFALQGEGAVSVATGQQIEATGVMKRIKDKAVFLVRSVKVGGDVFTIRNKHGFPVSPQARKRANQKTGGNEESL
Ga0210395_100035116F069184AGGVKFLKLLLRQGCAHRFSWPRIDDDGRHYQICLACGTAYEYDWRMMRRTSRLLVAAVQHELRSSSLSQ
Ga0210395_100035117F014056GGAMTHFLQRRPLRRAPRVSLRAAISAVIRLENGRQVRAKLKQLSISGGLLDLTTCLEERVWVELTIYLSSGPVRTAAEMMFPMQREGSFLQPFRFTGMGAEELHALDREVTGLLQQSVGTKTTEPSLRAPRYYLETW
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