NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10007059

Scaffold Ga0210395_10007059


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10007059 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8510
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013245Metagenome / Metatranscriptome273Y
F020066Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_100070592F020066N/AMGQALPEKPGGAILHTQGGVWVNGYEAHDSSAVFPGDVIETKPDSSANLSLDGSTVLIAPESVSKFQEDLLELDHGGVSVVTSKSFKVRVNCILVVPVMNDWTQYEVTDLNGTVQVAARKLDVNVEHERGPRKEVPESQPSQESASVHEGEQKSYDESKVCGPGARPTSSWGGISPKWIAAGAAGAGILIWLLIHGGNPKTPASPSQP
Ga0210395_100070595F013245GGAGGMSGKRLCLAVLTVATILSISAVAQDKKNEVGGLLGRTFISDQGIQNATYFDPIIHTGKGLTFEGEYARRFWVTPIYSVSAEGLLVYNWDIDLNAGQYGNSVVPSDMKKLFVTPAARMNLFPTTAVSPWISFGAGFGHISQNYQLIYGGTNPGKSTTSAVIEAGFGLDVKVWRKLSIRMDVRDFWAGQPDFPAGSDGQDAPA
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Institute for Fundamental Biomedical Research
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