NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10404681

Scaffold Ga0210395_10404681


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10404681 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F007884Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_104046812F000092GAGVKQHLGRQSGVQNVEVSLIDGKVEITPKEDGQIDPAQLMKATYDSGVTVAEMEMNAQGKIVKDSSGNLALQVEPNRSFALEPNELSKGLESLVGSQTVVTVRGQLYKKPVGKKKAGASAPLKLLLLEVQKKE
Ga0210395_104046813F004291AGGAGGMNSKKLALLVVLGFTFVPAAQAQIKHIEMRVEGMT
Ga0210395_104046814F007884N/ATQATRLGSDIESRFWLSYRPYESKNGAREWFIGPALAWLHSQDDRISGANQNGSGGDVLLAGITTYAGLRPGMHIWAGMDWDVAHSNGVMFMPVRRHISFGITQQFRLHL
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