NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10000073

Scaffold Ga0210401_10000073


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10000073 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)110178
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (63.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001455Metagenome / Metatranscriptome691Y
F027630Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000007374F027630N/AVPRLLPRHALLLSLLFVGPSCLAQTKTPAPENTPKATDSGLITCGDHPPYTSRTVKSDTLVTPDGKRKAYAEVEATALSPQRAAGYSGPLCVNNSRLFVTSDNGEFKLRFMQEPADVENGNSLRLIDWSADGRRLLAELAEWHYEQPGVVHSILLFDSRYGTFQQPEVAHLLAKTYDHDCSLDFRILGFGLQGKIVLEGSPLSPEEEEIQGVSSCVKKKTYFELDRATETLVSVPEMPKIQHNAKSEASK
Ga0210401_1000007385F001455AGGAMAKSSFSLKILYGEGDTEVLASQADAMQKAGHHVTTVIGRKGVEEALNKDAFDLVVLGPTLTRNDRHHLPYMVKKGHEGTRVLVMHSDGGRHPYVDTATDTGRSIESILETIASMMAQQKSVVAR
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Institute for Fundamental Biomedical Research
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