NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10002360

Scaffold Ga0210401_10002360


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10002360 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20978
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002813Metagenome / Metatranscriptome528Y
F002898Metagenome / Metatranscriptome522Y
F042992Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000236011F002813GAGMNHLEVLREKIGCLRAEIAQIQEMNNEYRRAGRHEPQAQVAHGQRHERLQAIQNELAKLSDLGRRVRSVEQMKEQHRGRLHFVKNAS
Ga0210401_1000236012F042992GAGGMKARWSAVLYAFFIVAGLGTCNLQAQQSAIAASVLHIQQTQTTSQGSQNGFPTYLAMYHILDGAKSPAEALSLMGTISLKNYDPTFSEVLWILVYWQGKCPAHDINLSEATRLWSDILKNPSQSDSTFTVNLDFPHPLPMTGCVGLYYGGGPLFEGKTTMSADLNLRYRPVINSDPDTVLDLSGEYCFGQDWGCQNATAIDGEGFAVPYRMQAAGHLLELFGNISDSTFDGTQNFGPLPAGASWGAANDFYLLPGGCGIFAENLNSQGFPNPAPLSTLHNWLPHDALHLASIPLVDRISSGETGEATLQGKVENIFSVPVKVNAGDCVVVIYSRSGNGATDNETQVHALLAP
Ga0210401_1000236017F002898AGGAGMSEAGERRSGFRVVLDFLKRLLGRKPAAPGDPYAYVTAPVRRGSKGRSGAAVAEIEEESFRSFPPRHGG
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