NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10004771

Scaffold Ga0210401_10004771


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10004771 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14076
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F017708Metagenome239Y
F048483Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_100047711F048483AGGAGGMCSSMLTVQAAPTSASLVQGAWGCDIYPPVHEKYEAQSNLLHMNWVLVDDTKGNSPAQMVWVVDR
Ga0210401_1000477112F017708AGGAGMAKVIEFYIPKNFRKPLRAMAQPQLGKIIEFCPQTKRSA
Ga0210401_100047719F001596GAGGMSWFHSSTAAVDARNHASPAEVAACFQDQRNVLGRLAFLITGDQATADQSVVQACEITLQGNSPFRNWLFEWAKAATIASAISHGTDAIHICEAGYRDRRCPHIEHLSQGDAEERAASLDFILGTDAKTVIAELDPLCRAVLVLRVAIRSSIQDCALRLSVSRAAVLGASCHAMTWLHGGHVKAIEENRDALQAV
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