Basic Information | |
---|---|
Taxon OID | 3300020583 Open in IMG/M |
Scaffold ID | Ga0210401_10006856 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 11517 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022474 | Metagenome / Metatranscriptome | 214 | Y |
F029822 | Metagenome / Metatranscriptome | 187 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210401_100068564 | F029822 | GAGG | VKTALLAVAFVLTLSLAAVAANSNKAEASLHKAGNPSATEPQFKNTPNPLPPALCHPCLFYGGDLNPNDVNAAGLSDENTLLIPGSSTYGAVDIPAGITAKVFGILFNVQASAAFDPMTASYDIRTGVSEGNGGVSISSGSGTVVVQATGRNFLGLNEYTIAVSWSTPVTLTSGTYWFNMTPTCTNTLDGSCVVFRQLVSNTTSLTHNVRGSWQPIHQMFVNSPFFGYTWLNWCDSALGLNGIQCAGMSFGLRGTK |
Ga0210401_100068565 | F022474 | GGAGG | VKTTSFALTLVVALTLSAAAASKKPAAARHLAGNDDPEKNDPPHIASGIPPALCDPCIFYGGDFNPNDPNASAYSDENTLLIGGSSTYANFNVFSGATVTITGILFNIQASANFDPVSASYDIRSGVTEGNGGTSLASGSGNAFVAATGRNFLGLNEYSVAVNLSTPLTLGPGAYWINLTPNCTNGAVDGSCSAGRFLFSNTTQRTNNVFGGAQGNHLLYINSPFFGYTWFNWCDTALGLRPRQCDAASFALMGSAQ |
⦗Top⦘ |