NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10010123

Scaffold Ga0210401_10010123


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10010123 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9255
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022942Metagenome / Metatranscriptome212Y
F024632Metagenome / Metatranscriptome205Y
F076358Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_100101234F022942AGGAGGMASNEGIGSPFLKQPSECSPKLRIYQSLFLLNEAIDHVVALLRNMGKFPFADKDSMQCAIVEIEEVRCDMNADFAEHLADSERFDEGHFWKQLRVFEKKWKDPDDVYIDVGRREEERKKLGLPSRVIGSILPHSAVAQAEERWEAEQERKKKRPRKPRK
Ga0210401_100101235F024632AGGAMETRSKLRETRLRRKYREVHGKVVDFITHAIDDGTLYFTVRFTDQTSFCVRSGCDMFAVGAELSDWQSGDFRIIREYMKPIPR
Ga0210401_100101238F076358GGAGMSFLDSSRPRSVLWLFYSSAFLSAIMFGAASYASVSYHRSLLVLALVTALAAAFFLVLFLCSRDERERQINYRALMFAFVGTLVFSLVVGMAQQLGLHSVPWLGLPAVMIVLWSFGLILYSWRDR
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