NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10011995

Scaffold Ga0210401_10011995


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10011995 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8444
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002142Metagenome / Metatranscriptome590Y
F011499Metagenome / Metatranscriptome290Y
F034660Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1001199511F011499GGAMTVVHPLDLTHFQAFLLFAVVISVAFGFLGRRRPKDRMKYILWSFFLFLLVGIGVGWAMFPFSR
Ga0210401_100119957F034660GGAGGMFEAPVDKQESKGSTGRIGVAILVLLVIAGVIYYLSSKQSPKEAAPAAAAPSAPADPVHDLKIVRVTMNKDPMGTTAVWLVTLQNKSTAYTYSNIRYETNYIGADDKPIVVNQGSIADSFSPGDEHNSQIRDTLYPNGTAWYKFKIVDAKASVR
Ga0210401_100119959F002142GAGGVKKSLGLFAALLLGASISPAGPQPQAGTIISQNSVACGAKKSKKKDIDILCQQYVVRSGATDFTIRQPKPSNETLIPINTPVEFSLDKNKMKFKANGKSFEFLVVAQAAATPAAP

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