NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10020642

Scaffold Ga0210401_10020642


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10020642 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6327
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001118Metagenome / Metatranscriptome773Y
F007481Metagenome / Metatranscriptome350Y
F101759Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_100206422F101759N/AMRTGNLAAVMRTMGHRDVKTAMHYQHPELEIVRAALDTVRQSLK
Ga0210401_100206426F001118N/AMGVTVELENLGDAQLCREIVARVEHAFSDKKGEWRVSIAGSRESESWEMRVAGPSGFERTYTLSRAAGEHTPEAIRRLTLQLVPANPS
Ga0210401_100206427F007481GAGMPPLPNANDRLQECVRRTLNKIKKPSTAEEITELLNRELGPGDRPFQTKEVAAWLRDAGDTVLHLYWLGSRPRR
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