NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10062595

Scaffold Ga0210401_10062595


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10062595 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3503
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004875Metagenome / Metatranscriptome420Y
F013683Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_100625952F004875AGGAGGMTRTFSTFVLAILRAGAVASVVLLLSALGLAQQVVTARATIPFNFWAQGHEFQAGDYVFDNEVPGSVAIHREATNSGIGVSIILYAVPQEKETPRVIFVLRDGKYFLFELWSVQGRYVVTAEFEHSGEAGEEQRQVPLTIVESQDQ
Ga0210401_100625954F013683GGAGGMEFNEYDFTRNPVVQNEVFFLESKCAACGFSILARSVDELVEQEAAHRRQCRRSNSVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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