NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10069786

Scaffold Ga0210401_10069786


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10069786 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3310
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006125Metagenome / Metatranscriptome381Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_100697862F006480N/AMRRVFLGGLALLFCGVIAAREKPEPLVFVFVRVDREKDLALLRPMIAPDIGVQLDSRPRSLDQGTVLRCTSFVREHSAIVEGQLAQVTDLLLDCGDRKFVVKTLDFTPERK
Ga0210401_100697863F000512N/AMIRVLRETHEAPENAAHRLKMAGGINRLGEPNYRAVWGWNRLAWIGGKFEEHDSATGSLLREVVELRQEPKYPAVNRWHIERWIAPEVYGSPRLWYAQTIERENGVSIPALGPYPSRGEYEHCFTLETPRGDFLQLTPTVAEHIARAIEFSRHVARSKKRRSIDDRERREDRAYDAWAYDKLDDAVPAFHKQPFVTVA
Ga0210401_100697864F000739GGTGGMKRLELKQLEVWIKGIVAAAISGGAGGVLTGLAAVGIDPQHFNLQTGMGATLRIAAAAALINAVIGVAAYLQKSPLPNDE
Ga0210401_100697865F000696GAGGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVALSVWEWRADGIYFIGATQDTQIRLRYSKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSTAVRREQQSARRRRPFSARSGYTPF
Ga0210401_100697867F006125GGAGMPITITLLPSNEDGSGSNLFYAIGTLTFSGNYPTGGDTMDFTTVADKLPSTQIIQVFADSQNGNSGYYVPVQGTALNNWKLKAFTGGGTELSAGAYPGSVTGDVVQVTITARKLQ
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