NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10124465

Scaffold Ga0210401_10124465


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10124465 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2417
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006125Metagenome / Metatranscriptome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_101244652F006125AGGAGMAITITVLPNNTDGSGSNLLYAIGALTFSGNYVVGGDTLDFTTVADKLPSTQIIQALVDSQNASLGKYVTVQGSGLNNWKLKAYTNAGVELTAVAYSTTFVNGDVVQITITARKLQ
Ga0210401_101244653F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTLLLPYANSAYRKVQRAIGNAGGGGFIQDDILLVVTAVAETDTSLQVAITDATAPPNQLPTDLLVPVKIWERPNLSTDDFLEMVDLSQHGGLPSRPQDITLSVWEWRADGIYFIGATQGTQIRLRYSKAYPDLTDSTSPVLVRNAQEAIAYATAALAAWSRGSPLAERWDQAAADAIEDLVVTAVRREQQSSRRRRPYSSRTGYTPF
Ga0210401_101244654F000739GAGMSKVEVWLKGIAAAAVSGGAGGILTGFAAVGIDPQHFNLQSGAGATLRIGVAASLINSVIGVAAYLQKSPLPDA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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