NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10156822

Scaffold Ga0210401_10156822


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10156822 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2126
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F006480Metagenome / Metatranscriptome372Y
F010188Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_101568221F006480N/AMRRILIGGLTLVLCAVIAARSKSDPLVFVFLRVDTAQNLAILRPMIPPDLGVRLDSGTRTLKTGSVLQCESTSRTHAAIVEGQVGSVQELLLDCGEQKFSVKTLEFSARTK
Ga0210401_101568223F000512N/AMIRIVRETHETPENVARRLEFAGGRNRYGEANYRAVWGWNRLAWIGGKFTEHDPATGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRMWYAQTIERENGVSIPALGPYPARGEYEHCFTLETPKGEFLQLTATAAEHIAQAIEWSRKFPRSAQKAQLYNREQGKENEYDQWAYDALDDSVPAFHRQPFVTVA
Ga0210401_101568224F000739GGTGGMTHMHIWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQSGIGATFRIGLAAALINAVIGVAAYLQKSPLPNDS
Ga0210401_101568225F010188GAGGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDAVLLPYANSAYRKLQRAIGNAGGGGFIQDDVLLVVPAVAQTDTSLQISISDSTAPPNQLP
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