NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180223_1000326

Scaffold Ga0180223_1000326


Overview

Basic Information
Taxon OID3300020591 Open in IMG/M
Scaffold IDGa0180223_1000326 Open in IMG/M
Source Dataset NameEnriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C Kraft OP (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69610
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (17.86%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064866Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0180223_100032643F064866N/AMKAPYLCCLLPVSILLYPLLSSAQPEENDSLAKYSYPIFAVTGKQQFTGTAFFYHSGDTTYLVSNYHAIKGMSPLKKAITFNSDTLYLKYSAKDSGGSKILPIDVSDAAIGETEIFSMVDRIDLLKIPLELPDGADIHFINDLIDPAYLNAVPEEVVVFGFPTGPGNIPPFYSQQQKLAGKVNQQGVADYDASLKVNFPGSSDSARAILSGTARYYYFIKPYAAQGYSGAPVFGKFRTADGQIVYRFTGVVFAGQPMTRQTWAIKGSVALQYLMGEL

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