NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206126_10006334

Scaffold Ga0206126_10006334


Overview

Basic Information
Taxon OID3300020595 Open in IMG/M
Scaffold IDGa0206126_10006334 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10528
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F037221Metagenome / Metatranscriptome168Y
F039623Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0206126_1000633419F037221N/AMTNWTTEQLKNLKEVTNHKVIYDGYEFVWMSKPDNIWSRHYISNFEDYNKPMSWIHHHTYNWGKEYKQRQEKYLADMRKSLDIDVKIREISREAKIKTKEKVVEILKLKPTLNNQEVADILGITIRTVRRVKNS
Ga0206126_1000633426F001728N/AMNNIELRKTKKDHYKLLLNGTDVTGEQERSTFRHIIQVIDNSINTGI
Ga0206126_1000633430F039623N/AMELLDSNNTITFKKFKCLRTNQIYEVVQTECTGRYINNAIDTLVRSDGLRKSFARAELRTRFSNIEGILEKDYLTKKKKKR
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