Scaffold Ga0213498_10008551

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213498_10008551

Scaffold Ga0213498_10008551

Overview

Basic Information
Taxon OID	3300020600 Open in IMG/M
Scaffold ID	Ga0213498_10008551 Open in IMG/M
Source Dataset Name	Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1146
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Above-Ground Endophytic Microbial Communities From Plants In Different Locations In The United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6622	Long. (^o)	-119.6197	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017428	Metagenome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213498_100085511	F017428	GGA	MGRLQGVTIDIEGVSALADFEVTEIVDDNNPYLTLLRIDWAIDMNGVINLRKRKMIFEEKSLRVVVPLDPIEGPRYIEPINVYESDDDLDHIYKITA

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